Two concurrent workshops will be held on the morning of Sat June 22, 2013. See the registration page for fees.
W1: Next-generation sequencing data analysis with GenomeSpace and Galaxy
Michael Reich (Broad Institute of MIT and Harvard) and Dave Clements (Emory University)
This workshop give an overview of the next-generation sequencing data analysis pipeline, focusing on RNA-seq, and participants will learn how to run this analysis using GenomeSpace and Galaxy. GenomeSpace brings together diverse computational tools into one place, enabling scientists without programming skills to easily combine their capabilities. Among the genomic tools available through GenomeSpace is Galaxy, an open, web-based platform for data intensive biomedical research. During the workshop, participants will learn how to load public RNA-seq data into GenomeSpace and analyze such data with Galaxy tool suites for quality assessment and RNA-seq analysis.
9:00 – 9:15 Next-generation sequencing data analysis workflow outline
9:15 – 10:15 GenomeSpace: introduction to the project and loading of the data
10:15 – 11:00 Galaxy: introduction to the project and data quality assessment
11:00 - 11:30 Coffee break
11:30 - 12:30 RNA-seq data analysis with Galaxy
W2: Using the DOE Systems Biology Knowledgebase (KBase) to perform analysis and modeling of genomics data
Michael Sneddon (Lawrence Berkeley National Laboratory) and Ric Colasanti (Argonne National Laboratory).